IL_4V5R_382

3D structure

PDB id

4V5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

4V5R|1|BA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5R_382 not in the Motif Atlas

Homologous match to IL_9DFE_010

Geometric discrepancy: 0.3407

The information below is about IL_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

4V5R|1|BA|C|288
4V5R|1|BA|A|289
4V5R|1|BA|G|290
*
4V5R|1|BA|U|350
4V5R|1|BA|G|351
4V5R|1|BA|G|352
4V5R|1|BA|G|353

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains