IL_4V5S_140

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*CGCCGGUGAAAUAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5S_140 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.4511

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4V5S|1|BA|G|2123
4V5S|1|BA|G|2124
4V5S|1|BA|G|2125
4V5S|1|BA|A|2126
4V5S|1|BA|G|2127
*
4V5S|1|BA|C|2161
4V5S|1|BA|G|2162
4V5S|1|BA|C|2163
4V5S|1|BA|C|2164
4V5S|1|BA|G|2165
4V5S|1|BA|G|2166
4V5S|1|BA|U|2167
4V5S|1|BA|G|2168
4V5S|1|BA|A|2169
4V5S|1|BA|A|2170
4V5S|1|BA|A|2171
4V5S|1|BA|U|2172
4V5S|1|BA|A|2173
4V5S|1|BA|C|2174

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BC

50S RIBOSOMAL PROTEIN L1