IL_4V5S_161

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

4V5S|1|BA|C|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5S_161 not in the Motif Atlas

Homologous match to IL_7RQB_108

Geometric discrepancy: 0.1499

The information below is about IL_7RQB_108

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V5S|1|BA|G|2838
4V5S|1|BA|G|2839
*
4V5S|1|BA|U|2878
4V5S|1|BA|C|2879
4V5S|1|BA|C|2880

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BR

50S RIBOSOMAL PROTEIN L17