IL_4V5S_171

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

4V5S|1|CA|C|48, 4V5S|1|CA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5S_171 not in the Motif Atlas

Geometric match to IL_4LFB_003

Geometric discrepancy: 0.0882

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V5S|1|CA|C|47
4V5S|1|CA|C|48
4V5S|1|CA|U|49
4V5S|1|CA|A|50
4V5S|1|CA|A|51
4V5S|1|CA|G|52
*
4V5S|1|CA|U|359
4V5S|1|CA|A|360
4V5S|1|CA|G|361

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CZ

ELONGATION FACTOR TU