IL_4V5S_179

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V5S|1|CA|U|244, 4V5S|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5S_179 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0919

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V5S|1|CA|C|242
4V5S|1|CA|A|243
4V5S|1|CA|U|244
4V5S|1|CA|C|245
4V5S|1|CA|A|246
4V5S|1|CA|G|247
*
4V5S|1|CA|C|277
4V5S|1|CA|G|278
4V5S|1|CA|A|279
4V5S|1|CA|C|280
4V5S|1|CA|G|281
4V5S|1|CA|A|282
4V5S|1|CA|C|283
4V5S|1|CA|G|284

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CQ

30S RIBOSOMAL PROTEIN S17