IL_4V5S_199

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V5S|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5S_199 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1685

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V5S|1|CA|G|683
4V5S|1|CA|A|684
4V5S|1|CA|G|685
4V5S|1|CA|U|686
4V5S|1|CA|A|687
4V5S|1|CA|G|688
*
4V5S|1|CA|C|699
4V5S|1|CA|G|700
4V5S|1|CA|C|701
4V5S|1|CA|A|702
4V5S|1|CA|G|703
4V5S|1|CA|A|704
4V5S|1|CA|U|705
4V5S|1|CA|A|706
4V5S|1|CA|C|707

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CK

30S RIBOSOMAL PROTEIN S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA