IL_4V5S_202

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5S_202 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.077

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V5S|1|CA|G|887
4V5S|1|CA|G|888
4V5S|1|CA|A|889
4V5S|1|CA|G|890
4V5S|1|CA|U|891
4V5S|1|CA|A|892
4V5S|1|CA|C|893
4V5S|1|CA|G|894
*
4V5S|1|CA|U|905
4V5S|1|CA|G|906
4V5S|1|CA|A|907
4V5S|1|CA|A|908
4V5S|1|CA|A|909
4V5S|1|CA|C|910

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CQ

30S RIBOSOMAL PROTEIN S17