3D structure

PDB id
4V5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUAAG*CGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5S_242 not in the Motif Atlas
Homologous match to IL_4WF9_019
Geometric discrepancy: 0.1416
The information below is about IL_4WF9_019
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V5S|1|DA|U|606
4V5S|1|DA|U|607
4V5S|1|DA|A|608
4V5S|1|DA|A|609
4V5S|1|DA|G|610
*
4V5S|1|DA|C|618
4V5S|1|DA|G|619
4V5S|1|DA|G|620
4V5S|1|DA|A|621
4V5S|1|DA|G|622

Current chains

Chain DA
23S RIBOSOMAL RNA

Nearby chains

Chain DF
50S RIBOSOMAL PROTEIN L4
Chain DP
50S RIBOSOMAL PROTEIN L15

Coloring options:


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