IL_4V5S_361
3D structure
- PDB id
- 4V5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5S_361 not in the Motif Atlas
- Homologous match to IL_7A0S_111
- Geometric discrepancy: 0.1194
- The information below is about IL_7A0S_111
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.4
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V5S|1|DA|U|858
4V5S|1|DA|G|859
4V5S|1|DA|U|860
4V5S|1|DA|A|861
4V5S|1|DA|G|862
*
4V5S|1|DA|C|915
4V5S|1|DA|G|916
4V5S|1|DA|A|917
4V5S|1|DA|A|918
4V5S|1|DA|G|919
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain D0
- 50S RIBOSOMAL PROTEIN L27
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DQ
- 50S RIBOSOMAL PROTEIN L16
- Chain DZ
- 50S RIBOSOMAL PROTEIN L25
Coloring options: