IL_4V5Y_145

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Y_145 not in the Motif Atlas

Geometric match to IL_4WF9_076

Geometric discrepancy: 0.0981

The information below is about IL_4WF9_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_24886.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

4V5Y|1|BB|G|1933
4V5Y|1|BB|C|1934
*
4V5Y|1|BB|G|1964
4V5Y|1|BB|C|1965
4V5Y|1|BB|A|1966
4V5Y|1|BB|C|1967

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein RRF