Motif IL_24886.2 Version IL_24886.2 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_071 | 7A0S | 0.2483 | 0 | Bulged stacked bases | X | LSU rRNA | G | 1947 | C | 1948 | A | 1949 | C | 1950 | * | G | 1916 | C | 1917 | cWW | cWW |
| 2 | IL_4WF9_076 | 4WF9 | 0.2806 | 0 | Bulged stacked bases | X | LSU rRNA | G | 1991 | C | 1992 | A | 1993 | C | 1994 | * | G | 1960 | C | 1961 | cWW | cWW |
| 3 | IL_8B0X_137 | 8B0X | 0.2561 | 0 | a | LSU rRNA | G | 1968 | C | 1969 | A | 1970 | C | 1971 | * | G | 1937 | C | 1938 | cWW | cWW | |
| 4 | IL_9DFE_076 | 9DFE | 0.2158 | 0 | 1A | LSU rRNA | G | 1964 | C | 1965 | A | 1966 | C | 1967 | * | G | 1933 | C | 1934 | cWW | cWW | |
| 5 | IL_4V9F_070 | 4V9F | 0.1428 | 0 | Bulged stacked bases | 0 | LSU rRNA | G | 2005 | C | 2006 | A | 2007 | U | 2008 | * | G | 1974 | C | 1975 | cWW | cWW |
| 6 | IL_9E6Q_073 | 9E6Q | 0.1015 | 0 | 1 | LSU rRNA | G | 2085 | C | 2086 | A | 2087 | OMU | 2088 | * | G | 2054 | C | 2055 | cWW | cWW | |
| 7 | IL_8GLP_124 | 8GLP | 0.0562 | 0 | L5 | LSU rRNA | G | 3811 | C | 3812 | A | 3813 | U | 3814 | * | G | 3780 | C | 3781 | cWW | cWW | |
| 8 | IL_9AXU_083 | 9AXU | 0.0000 | 0 | 2 | LSU rRNA | G | 2395 | C | 2396 | A | 2397 | U | 2398 | * | G | 2364 | C | 2365 | cWW | cWW | |
| 9 | IL_8P9A_317 | 8P9A | 0.0611 | 0 | AR | LSU rRNA | G | 2307 | C | 2308 | A | 2309 | U | 2310 | * | G | 2276 | C | 2277 | cWW | cWW | |
| 10 | IL_8OI5_091 | 8OI5 | 0.0930 | 0 | 1 | LSU rRNA | G | 2285 | C | 2286 | A | 2287 | U | 2288 | * | G | 2254 | C | 2255 | cWW | cWW | |
| 11 | IL_8CRE_431 | 8CRE | 0.5671 | 0 | CM | SSU rRNA | G | 803 | U | 804 | U | 805 | A | 806 | * | U | 836 | C | 837 | cWW | cWW | |
| 12 | IL_397D_001 | 397D | 0.6068 | 1 | Multiple bulged bases | A+B | RNA (15-mer) + RNA (12-mer) | A | 22 | U | 23 | C | 24 | G | 26 | * | C | 39 | U | 40 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAU*GC | 5 |
| GCAC*GC | 4 |
| GCA(OMU)*GC | 1 |
| GUUA*UC | 1 |
| AUCUG*CU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CA* | 10 |
| UU* | 1 |
| UCU* | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Bulged stacked bases (3)
- Multiple bulged bases (1)
- Basepair signature
- cWW-L-cWW-L
- Heat map statistics
- Min 0.06 | Avg 0.31 | Max 0.77
Coloring options: