IL_4V5Y_192

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V5Y|1|CA|U|244, 4V5Y|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Y_192 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.11

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V5Y|1|CA|G|242
4V5Y|1|CA|A|243
4V5Y|1|CA|U|244
4V5Y|1|CA|U|245
4V5Y|1|CA|A|246
4V5Y|1|CA|G|247
*
4V5Y|1|CA|C|277
4V5Y|1|CA|G|278
4V5Y|1|CA|A|279
4V5Y|1|CA|C|280
4V5Y|1|CA|G|281
4V5Y|1|CA|A|282
4V5Y|1|CA|U|283
4V5Y|1|CA|C|284

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17