IL_4V5Y_212

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Y_212 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.0888

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

4V5Y|1|CA|G|654
4V5Y|1|CA|A|655
*
4V5Y|1|CA|U|751
4V5Y|1|CA|G|752
4V5Y|1|CA|A|753
4V5Y|1|CA|C|754

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CO

30S ribosomal protein S15