IL_4V5Y_279
3D structure
- PDB id
- 4V5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.45 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5Y_279 not in the Motif Atlas
- Homologous match to IL_5J7L_272
- Geometric discrepancy: 0.114
- The information below is about IL_5J7L_272
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V5Y|1|DB|G|864
4V5Y|1|DB|C|865
4V5Y|1|DB|A|866
4V5Y|1|DB|C|867
4V5Y|1|DB|U|868
*
4V5Y|1|DB|A|909
4V5Y|1|DB|A|910
4V5Y|1|DB|A|911
4V5Y|1|DB|C|912
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain DA
- 5S ribosomal RNA; 5S rRNA
- Chain DM
- 50S ribosomal protein L16
Coloring options: