IL_4V5Y_362

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

4V5Y|1|DB|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Y_362 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0722

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4V5Y|1|DB|G|1666
4V5Y|1|DB|G|1667
4V5Y|1|DB|A|1668
4V5Y|1|DB|A|1669
4V5Y|1|DB|C|1670
4V5Y|1|DB|U|1671
4V5Y|1|DB|A|1672
4V5Y|1|DB|G|1673
4V5Y|1|DB|G|1674
*
4V5Y|1|DB|C|1990
4V5Y|1|DB|U|1991
4V5Y|1|DB|G|1992
4V5Y|1|DB|U|1993
4V5Y|1|DB|C|1994

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DK

50S ribosomal protein L14