IL_4V61_005

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGGA*UG

Length

6 nucleotides

Bulged bases

4V61|1|AA|G|65, 4V61|1|AA|G|66

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_005 not in the Motif Atlas

Homologous match to IL_4LFB_005

Geometric discrepancy: 0.1117

The information below is about IL_4LFB_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V61|1|AA|C|64
4V61|1|AA|G|65
4V61|1|AA|G|66
4V61|1|AA|A|67
*
4V61|1|AA|U|87
4V61|1|AA|G|88

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

Ribosomal Protein S20