IL_4V61_015

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

4V61|1|AA|G|359

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_015 not in the Motif Atlas

Homologous match to IL_4LFB_016

Geometric discrepancy: 0.1642

The information below is about IL_4LFB_016

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

4V61|1|AA|U|346
4V61|1|AA|G|347
*
4V61|1|AA|U|358
4V61|1|AA|G|359
4V61|1|AA|A|360

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

Ribosomal Protein S16