IL_4V61_017

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

AGAAG*CGGUAU

Length

11 nucleotides

Bulged bases

4V61|1|AA|G|433

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_017 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1224

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V61|1|AA|A|417
4V61|1|AA|G|418
4V61|1|AA|A|419
4V61|1|AA|A|420
4V61|1|AA|G|421
*
4V61|1|AA|C|431
4V61|1|AA|G|432
4V61|1|AA|G|433
4V61|1|AA|U|434
4V61|1|AA|A|435
4V61|1|AA|U|436

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

Ribosomal Protein S4

Chain AP

Ribosomal Protein S16