IL_4V61_018

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_018 not in the Motif Atlas

Geometric match to IL_5J7L_024

Geometric discrepancy: 0.1405

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V61|1|AA|C|452
4V61|1|AA|G|453
4V61|1|AA|G|454
4V61|1|AA|C|455
4V61|1|AA|U|456
4V61|1|AA|A|457
4V61|1|AA|A|458
4V61|1|AA|C|459
*
4V61|1|AA|G|488
4V61|1|AA|G|489

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

Ribosomal Protein S4

Chain AL

Ribosomal Protein S12