IL_4V61_020
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- UGUAG*UGAGA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V61_020 not in the Motif Atlas
- Homologous match to IL_5J7L_027
- Geometric discrepancy: 0.099
- The information below is about IL_5J7L_027
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
4V61|1|AA|U|528
4V61|1|AA|G|529
4V61|1|AA|U|530
4V61|1|AA|A|531
4V61|1|AA|G|532
*
4V61|1|AA|U|705
4V61|1|AA|G|706
4V61|1|AA|A|707
4V61|1|AA|G|708
4V61|1|AA|A|709
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AH
- Ribosomal Protein S8
- Chain AL
- Ribosomal Protein S12
- Chain AO
- Ribosomal Protein S15
- Chain AQ
- Ribosomal Protein S17
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: