IL_4V61_022

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UAA*UA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_022 not in the Motif Atlas

Geometric match to IL_5J7L_028

Geometric discrepancy: 0.1552

The information below is about IL_5J7L_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

4V61|1|AA|U|542
4V61|1|AA|A|543
4V61|1|AA|A|544
*
4V61|1|AA|U|592
4V61|1|AA|A|593

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AH

Ribosomal Protein S8

Chain AQ

Ribosomal Protein S17