IL_4V61_029

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGAAU*AGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_029 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.064

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V61|1|AA|C|727
4V61|1|AA|G|728
4V61|1|AA|A|729
4V61|1|AA|A|730
4V61|1|AA|U|731
*
4V61|1|AA|A|747
4V61|1|AA|G|748
4V61|1|AA|U|749
4V61|1|AA|A|750
4V61|1|AA|G|751

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

Ribosomal Protein S11

Chain AU

Ribosomal Protein S21

Chain BA

Large subunit ribosomal RNA; LSU rRNA