IL_4V61_041

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

4V61|1|AA|A|1144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_041 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.2059

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4V61|1|AA|U|1009
4V61|1|AA|G|1010
*
4V61|1|AA|C|1143
4V61|1|AA|A|1144
4V61|1|AA|A|1145

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

Ribosomal Protein S3

Chain AE

Ribosomal Protein S5

Chain AJ

Ribosomal Protein S10

Chain AN

Ribosomal Protein S14