IL_4V61_042

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_042 not in the Motif Atlas

Geometric match to IL_5J7L_050

Geometric discrepancy: 0.1072

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V61|1|AA|G|1010
4V61|1|AA|U|1011
4V61|1|AA|C|1012
*
4V61|1|AA|G|1141
4V61|1|AA|U|1142
4V61|1|AA|C|1143

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

Ribosomal Protein S3

Chain AE

Ribosomal Protein S5

Chain AJ

Ribosomal Protein S10