IL_4V61_048

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGAUC*GUGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_048 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1223

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V61|1|AA|C|1207
4V61|1|AA|G|1208
4V61|1|AA|A|1209
4V61|1|AA|U|1210
4V61|1|AA|C|1211
*
4V61|1|AA|G|1220
4V61|1|AA|U|1221
4V61|1|AA|G|1222
4V61|1|AA|A|1223
4V61|1|AA|G|1224

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

Ribosomal Protein S14