IL_4V61_053

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4V61|1|AA|A|1442

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_053 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.3026

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

4V61|1|AA|C|1356
4V61|1|AA|A|1357
4V61|1|AA|C|1358
*
4V61|1|AA|G|1440
4V61|1|AA|A|1441
4V61|1|AA|A|1442
4V61|1|AA|G|1443

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

Ribosomal Protein S12

Chain BA

Large subunit ribosomal RNA; LSU rRNA