IL_4V61_080
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- GGGGUAA*UGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V61_080 not in the Motif Atlas
- Homologous match to IL_4WF9_031
- Geometric discrepancy: 0.244
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V61|1|BA|G|866
4V61|1|BA|G|867
4V61|1|BA|G|868
4V61|1|BA|G|869
4V61|1|BA|U|870
4V61|1|BA|A|871
4V61|1|BA|A|872
*
4V61|1|BA|U|924
4V61|1|BA|G|925
4V61|1|BA|A|926
4V61|1|BA|A|927
4V61|1|BA|U|928
4V61|1|BA|A|929
4V61|1|BA|C|930
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BO
- Ribosomal Protein L16
- Chain BX
- Ribosomal Protein L27
Coloring options: