IL_4V61_085

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GCUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

4V61|1|BA|A|1183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_085 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.1838

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V61|1|BA|G|1025
4V61|1|BA|C|1026
4V61|1|BA|U|1027
4V61|1|BA|A|1028
4V61|1|BA|A|1029
4V61|1|BA|G|1030
*
4V61|1|BA|C|1180
4V61|1|BA|G|1181
4V61|1|BA|A|1182
4V61|1|BA|A|1183
4V61|1|BA|G|1184
4V61|1|BA|C|1185

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BS

Ribosomal Protein L20

Chain BT

Ribosomal Protein L21