IL_4V61_097

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UUGAGUAA*UGAAAUA

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_097 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.204

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V61|1|BA|U|1283
4V61|1|BA|U|1284
4V61|1|BA|G|1285
4V61|1|BA|A|1286
4V61|1|BA|G|1287
4V61|1|BA|U|1288
4V61|1|BA|A|1289
4V61|1|BA|A|1290
*
4V61|1|BA|U|2025
4V61|1|BA|G|2026
4V61|1|BA|A|2027
4V61|1|BA|A|2028
4V61|1|BA|A|2029
4V61|1|BA|U|2030
4V61|1|BA|A|2031

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

Ribosomal Protein L32

Chain BG

Ribosomal Protein L4

Chain BU

Ribosomal Protein L22