IL_4V61_101

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CCCU*AAAGG

Length

9 nucleotides

Bulged bases

4V61|1|BA|A|1628

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_101 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2044

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

4V61|1|BA|C|1429
4V61|1|BA|C|1430
4V61|1|BA|C|1431
4V61|1|BA|U|1432
*
4V61|1|BA|A|1626
4V61|1|BA|A|1627
4V61|1|BA|A|1628
4V61|1|BA|G|1629
4V61|1|BA|G|1630

Current chains

Chain BA

23S rRNA

Nearby chains