IL_4V61_107

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

ACGCAAGGU*GCCAAUGU

Length

17 nucleotides

Bulged bases

4V61|1|BA|A|1496, 4V61|1|BA|G|1498

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_107 not in the Motif Atlas

Homologous match to IL_4WF9_059

Geometric discrepancy: 0.5659

The information below is about IL_4WF9_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|A|1492
4V61|1|BA|C|1493
4V61|1|BA|G|1494
4V61|1|BA|C|1495
4V61|1|BA|A|1496
4V61|1|BA|A|1497
4V61|1|BA|G|1498
4V61|1|BA|G|1499
4V61|1|BA|U|1500
*
4V61|1|BA|G|1545
4V61|1|BA|C|1546
4V61|1|BA|C|1547
4V61|1|BA|A|1548
4V61|1|BA|A|1549
4V61|1|BA|U|1550
4V61|1|BA|G|1551
4V61|1|BA|U|1552

Current chains

Chain BA

23S rRNA

Nearby chains