IL_4V61_111

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UAA*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_111 not in the Motif Atlas

Geometric match to IL_4WF9_063

Geometric discrepancy: 0.3992

The information below is about IL_4WF9_063

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_10432.2

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

11

Unit IDs

4V61|1|BA|U|1699
4V61|1|BA|A|1700
4V61|1|BA|A|1701
*
4V61|1|BA|U|2009
4V61|1|BA|C|2010
4V61|1|BA|G|2011

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

Ribosomal Protein L3

Chain BM

Ribosomal Protein L14