IL_4V61_113

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V61|1|BA|G|1735

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_113 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.2006

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V61|1|BA|C|1722
4V61|1|BA|G|1723
4V61|1|BA|U|1724
4V61|1|BA|A|1725
4V61|1|BA|A|1726
4V61|1|BA|C|1727
*
4V61|1|BA|G|1732
4V61|1|BA|G|1733
4V61|1|BA|A|1734
4V61|1|BA|G|1735
4V61|1|BA|A|1736
4V61|1|BA|A|1737
4V61|1|BA|G|1738

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BE

Ribosomal Protein L2