IL_4V61_115

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGCAAAG*CCAUGUAUG

Length

16 nucleotides

Bulged bases

4V61|1|BA|A|1811, 4V61|1|BA|U|1826, 4V61|1|BA|U|1830

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_115 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.2897

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V61|1|BA|C|1808
4V61|1|BA|G|1809
4V61|1|BA|C|1810
4V61|1|BA|A|1811
4V61|1|BA|A|1812
4V61|1|BA|A|1813
4V61|1|BA|G|1814
*
4V61|1|BA|C|1823
4V61|1|BA|C|1824
4V61|1|BA|A|1825
4V61|1|BA|U|1826
4V61|1|BA|G|1827
4V61|1|BA|U|1828
4V61|1|BA|A|1829
4V61|1|BA|U|1830
4V61|1|BA|G|1831

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BE

Ribosomal Protein L2