IL_4V61_120

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GAAG*CGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_120 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.1902

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V61|1|BA|G|1866
4V61|1|BA|A|1867
4V61|1|BA|A|1868
4V61|1|BA|G|1869
*
4V61|1|BA|C|1897
4V61|1|BA|G|1898
4V61|1|BA|A|1899
4V61|1|BA|C|1900

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

Ribosomal Protein L1