IL_4V61_122

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GCGAAAUUCCUUGU*ACCCGCAC

Length

22 nucleotides

Bulged bases

4V61|1|BA|A|1952, 4V61|1|BA|U|1958, 4V61|1|BA|C|1977

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|G|1947
4V61|1|BA|C|1948
4V61|1|BA|G|1949
4V61|1|BA|A|1950
4V61|1|BA|A|1951
4V61|1|BA|A|1952
4V61|1|BA|U|1953
4V61|1|BA|U|1954
4V61|1|BA|C|1955
4V61|1|BA|C|1956
4V61|1|BA|U|1957
4V61|1|BA|U|1958
4V61|1|BA|G|1959
4V61|1|BA|U|1960
*
4V61|1|BA|A|1974
4V61|1|BA|C|1975
4V61|1|BA|C|1976
4V61|1|BA|C|1977
4V61|1|BA|G|1978
4V61|1|BA|C|1979
4V61|1|BA|A|1980
4V61|1|BA|C|1981

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA