IL_4V61_134

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CAAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_134 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.1875

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V61|1|BA|C|2367
4V61|1|BA|A|2368
4V61|1|BA|A|2369
4V61|1|BA|G|2370
*
4V61|1|BA|C|2381
4V61|1|BA|G|2382
4V61|1|BA|A|2383
4V61|1|BA|G|2384

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

Ribosomal Protein L35

Chain BQ

Ribosomal Protein L18

Chain BX

Ribosomal Protein L27