IL_4V61_135

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

4V61|1|BA|G|2419

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_135 not in the Motif Atlas

Geometric match to IL_4V9F_010

Geometric discrepancy: 0.2386

The information below is about IL_4V9F_010

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

4V61|1|BA|U|2418
4V61|1|BA|G|2419
4V61|1|BA|C|2420
*
4V61|1|BA|G|2431
4V61|1|BA|G|2432

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

Ribosomal Protein L33

Chain B5

Ribosomal Protein L35

Chain BN

Ribosomal Protein L15