IL_4V61_139

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

4V61|1|BA|G|2593, 4V61|1|BA|A|2594

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_139 not in the Motif Atlas

Geometric match to IL_4V9F_087

Geometric discrepancy: 0.1851

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V61|1|BA|C|2527
4V61|1|BA|U|2528
4V61|1|BA|C|2529
*
4V61|1|BA|G|2591
4V61|1|BA|U|2592
4V61|1|BA|G|2593
4V61|1|BA|A|2594
4V61|1|BA|G|2595

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

Ribosomal Protein L32

Chain BF

Ribosomal Protein L3