IL_4V61_140

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUU*GUACG

Length

8 nucleotides

Bulged bases

4V61|1|BA|A|2589, 4V61|1|BA|C|2590

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_140 not in the Motif Atlas

Geometric match to IL_7VFT_005

Geometric discrepancy: 0.3478

The information below is about IL_7VFT_005

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_00627.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

24

Unit IDs

4V61|1|BA|C|2529
4V61|1|BA|U|2530
4V61|1|BA|U|2531
*
4V61|1|BA|G|2587
4V61|1|BA|U|2588
4V61|1|BA|A|2589
4V61|1|BA|C|2590
4V61|1|BA|G|2591

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

Ribosomal Protein L3

Chain BL

Ribosomal Protein L13