IL_4V61_148

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UU*AAACG

Length

7 nucleotides

Bulged bases

4V61|1|BA|C|2731

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_148 not in the Motif Atlas

Homologous match to IL_5J7L_349

Geometric discrepancy: 0.1401

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4V61|1|BA|U|2712
4V61|1|BA|U|2713
*
4V61|1|BA|A|2728
4V61|1|BA|A|2729
4V61|1|BA|A|2730
4V61|1|BA|C|2731
4V61|1|BA|G|2732

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

4.8S rRNA

Chain BP

Ribosomal Protein L17