IL_4V61_155
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- CAAG*CUGAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V61_155 not in the Motif Atlas
- Geometric match to IL_5J7L_353
- Geometric discrepancy: 0.2373
- The information below is about IL_5J7L_353
- Detailed Annotation
- Multiple bulged bases with non-canonical cWW
- Broad Annotation
- Multiple bulged bases with non-canonical cWW
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
4V61|1|BC|C|44
4V61|1|BC|A|45
4V61|1|BC|A|46
4V61|1|BC|G|47
*
4V61|1|BC|C|71
4V61|1|BC|U|72
4V61|1|BC|G|73
4V61|1|BC|A|74
4V61|1|BC|G|75
Current chains
- Chain BC
- 4.8S rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- Ribosomal Protein L3
- Chain BP
- Ribosomal Protein L17
- Chain BR
- Ribosomal Protein L19
Coloring options: