IL_4V61_156

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UGGAAG*UGCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_156 not in the Motif Atlas

Geometric match to IL_5J7L_354

Geometric discrepancy: 0.3696

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V61|1|BC|U|48
4V61|1|BC|G|49
4V61|1|BC|G|50
4V61|1|BC|A|51
4V61|1|BC|A|52
4V61|1|BC|G|53
*
4V61|1|BC|U|66
4V61|1|BC|G|67
4V61|1|BC|C|68
4V61|1|BC|A|69
4V61|1|BC|G|70

Current chains

Chain BC

4.8S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BP

Ribosomal Protein L17

Chain BR

Ribosomal Protein L19