IL_4V61_167

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

AUGAAG*UGGAGGU

Length

13 nucleotides

Bulged bases

4V61|1|BA|G|740

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_167 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2526

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V61|1|BA|A|713
4V61|1|BA|U|714
4V61|1|BA|G|715
4V61|1|BA|A|716
4V61|1|BA|A|717
4V61|1|BA|G|718
*
4V61|1|BA|U|735
4V61|1|BA|G|736
4V61|1|BA|G|737
4V61|1|BA|A|738
4V61|1|BA|G|739
4V61|1|BA|G|740
4V61|1|BA|U|741

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

Ribosomal Protein L2