IL_4V61_170

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UAGGGGUAAAGCACUG*CAAACUCUGAAUACUA

Length

32 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|U|864
4V61|1|BA|A|865
4V61|1|BA|G|866
4V61|1|BA|G|867
4V61|1|BA|G|868
4V61|1|BA|G|869
4V61|1|BA|U|870
4V61|1|BA|A|871
4V61|1|BA|A|872
4V61|1|BA|A|873
4V61|1|BA|G|874
4V61|1|BA|C|875
4V61|1|BA|A|876
4V61|1|BA|C|877
4V61|1|BA|U|878
4V61|1|BA|G|879
*
4V61|1|BA|C|917
4V61|1|BA|A|918
4V61|1|BA|A|919
4V61|1|BA|A|920
4V61|1|BA|C|921
4V61|1|BA|U|922
4V61|1|BA|C|923
4V61|1|BA|U|924
4V61|1|BA|G|925
4V61|1|BA|A|926
4V61|1|BA|A|927
4V61|1|BA|U|928
4V61|1|BA|A|929
4V61|1|BA|C|930
4V61|1|BA|U|931
4V61|1|BA|A|932

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BO

Ribosomal Protein L16

Chain BQ

Ribosomal Protein L18

Chain BX

Ribosomal Protein L27