IL_4V61_173

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CC*GGCUAAGCGGUCUG

Length

16 nucleotides

Bulged bases

4V61|1|BA|U|1168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|C|1032
4V61|1|BA|C|1033
*
4V61|1|BA|G|1165
4V61|1|BA|G|1166
4V61|1|BA|C|1167
4V61|1|BA|U|1168
4V61|1|BA|A|1169
4V61|1|BA|A|1170
4V61|1|BA|G|1171
4V61|1|BA|C|1172
4V61|1|BA|G|1173
4V61|1|BA|G|1174
4V61|1|BA|U|1175
4V61|1|BA|C|1176
4V61|1|BA|U|1177
4V61|1|BA|G|1178

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BL

Ribosomal Protein L13

Chain BS

Ribosomal Protein L20