IL_4V61_179

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UGGUCCCGA*UCGAAAGACCUUCA

Length

23 nucleotides

Bulged bases

4V61|1|BA|C|1441, 4V61|1|BA|A|1613, 4V61|1|BA|A|1614, 4V61|1|BA|U|1619

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|U|1436
4V61|1|BA|G|1437
4V61|1|BA|G|1438
4V61|1|BA|U|1439
4V61|1|BA|C|1440
4V61|1|BA|C|1441
4V61|1|BA|C|1442
4V61|1|BA|G|1443
4V61|1|BA|A|1444
*
4V61|1|BA|U|1609
4V61|1|BA|C|1610
4V61|1|BA|G|1611
4V61|1|BA|A|1612
4V61|1|BA|A|1613
4V61|1|BA|A|1614
4V61|1|BA|G|1615
4V61|1|BA|A|1616
4V61|1|BA|C|1617
4V61|1|BA|C|1618
4V61|1|BA|U|1619
4V61|1|BA|U|1620
4V61|1|BA|C|1621
4V61|1|BA|A|1622

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

Ribosomal Protein L2