IL_4V61_180

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

AGGGACGGA*UCCCAGGAAAAGCU

Length

23 nucleotides

Bulged bases

4V61|1|BA|C|1449, 4V61|1|BA|A|1600, 4V61|1|BA|G|1601

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|A|1444
4V61|1|BA|G|1445
4V61|1|BA|G|1446
4V61|1|BA|G|1447
4V61|1|BA|A|1448
4V61|1|BA|C|1449
4V61|1|BA|G|1450
4V61|1|BA|G|1451
4V61|1|BA|A|1452
*
4V61|1|BA|U|1596
4V61|1|BA|C|1597
4V61|1|BA|C|1598
4V61|1|BA|C|1599
4V61|1|BA|A|1600
4V61|1|BA|G|1601
4V61|1|BA|G|1602
4V61|1|BA|A|1603
4V61|1|BA|A|1604
4V61|1|BA|A|1605
4V61|1|BA|A|1606
4V61|1|BA|G|1607
4V61|1|BA|C|1608
4V61|1|BA|U|1609

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

Ribosomal Protein L2