IL_4V61_190

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UUGG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_190 not in the Motif Atlas

Homologous match to IL_4WF9_124

Geometric discrepancy: 0.5091

The information below is about IL_4WF9_124

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_10994.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V61|1|BA|U|2111
4V61|1|BA|U|2112
4V61|1|BA|G|2113
4V61|1|BA|G|2114
*
4V61|1|BA|U|2203
4V61|1|BA|A|2204
4V61|1|BA|G|2205
4V61|1|BA|A|2206

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BJ

Ribosomal Protein L9