IL_4V61_191

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUGCGCAGCUUAGG*CUCUG

Length

19 nucleotides

Bulged bases

4V61|1|BA|U|2123, 4V61|1|BA|G|2124, 4V61|1|BA|C|2125, 4V61|1|BA|C|2130, 4V61|1|BA|U|2131, 4V61|1|BA|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|C|2122
4V61|1|BA|U|2123
4V61|1|BA|G|2124
4V61|1|BA|C|2125
4V61|1|BA|G|2126
4V61|1|BA|C|2127
4V61|1|BA|A|2128
4V61|1|BA|G|2129
4V61|1|BA|C|2130
4V61|1|BA|U|2131
4V61|1|BA|U|2132
4V61|1|BA|A|2133
4V61|1|BA|G|2134
4V61|1|BA|G|2135
*
4V61|1|BA|C|2191
4V61|1|BA|U|2192
4V61|1|BA|C|2193
4V61|1|BA|U|2194
4V61|1|BA|G|2195

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

Ribosomal Protein L1